|Mapping the Space of Genomic Signatures
Kari L, Hill KA, Sayem AS, Karamichalis R, Bryans N, Davis K, Dattani NS.
PLOS One (2015)
Category: bioinformatics, evolution, mitochondrial DNA ¤ Added: May 24th, 2015 ¤
|TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes.
Guo L, Zhang D, Wang Y, Malmberg RL, McEachern M, Cai L
International Journal of Bioinformatics Research and Applications (2011) 7: 63-81.
Category: bioinformatics, RNA structure, telomerase ¤ Added: Apr 3rd, 2011 ¤
|Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence.
Marcet-Houben M, Marceddu G, Gabaldón T
BMC Evolutionary Biology (2009) 21: 295.
Category: bioenergetics, bioinformatics, mitochondria, respiration ¤ Added: Mar 3rd, 2011 ¤
|Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index.
Arakawa K, Suzuki H, Tomita M
BMC Genomics (2009) 10: 640.
Category: bacterial chromosome, bioinformatics, DNA replication ¤ Added: Jan 25th, 2010 ¤
|The genetic landscape of a cell.
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, M...
Science (2010) 327: 425-31.
Category: bioinformatics, biological networks, Gene Deletion , yeast-misc ¤ Added: Jan 25th, 2010 ¤
|The tedious task of finding homologous noncoding RNA genes.
Menzel P, Gorodkin J, Stadler PF
RNA (2009) 15: 2075-82.
Category: bioinformatics, genomics, RNA structure ¤ Added: Jan 11th, 2010 ¤
|Computational reconstruction of ancestral DNA sequences.
Blanchette M, Diallo AB, Green ED, Miller W, Haussler D
Methods Mol Biol (2008) 422: 171-84.
Category: bioinformatics, evolution, genomics ¤ Added: Jan 4th, 2010 ¤
|Modeling Mitochondrial Bioenergetics with Integrated Volume Dynamics
Bazil JN, Buzzard GT, Rundell AE
PLoS Comput Biol (2010) 6: e1000632-e1000632.
Category: bioinformatics, calcium, ions, metabolism, mitochondria, modeling, potassium ¤ Added: Jan 4th, 2010 ¤
|CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes.
Xu Z, Hao B
Nucleic Acids Res (2009) 37: W174-8.
Category: bioinformatics, genomics ¤ Added: Nov 13th, 2009 ¤
|QuickGO: a web-based tool for Gene Ontology searching.
Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R
Bioinformatics (2009) 25: 3045-6.
Category: bioinformatics, biological networks ¤ Added: Nov 13th, 2009 ¤